- Basic information
- CohesinDB ID: CDBP00418038
- Locus: chr21-35298915-35299201
-
Data sourse: GSE116344, GSE131606, GSE68388, GSE98367
-
Cell type: Macrophage, RH4, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 79%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, SMC1A, FOXA2, POU5F1, MEIS2, ZFX, XBP1, ZNF692, WT1, STAT1, FOXA1, PBX2, RELA, RUNX2, MYC, GATA4, ZNF184, MCM3, GRHL3, TCF4, NKX2-1, FOXK2, PRDM9, GATA3, ATF2, SPIB, GATA1, IKZF1, NFE2, KLF4, ESR1, OCA2, CTCF, SPI1, KLF1, BCL11A, MNT, GATA6, ZBTB7A, IRF4, ATF7, HSF1, RNF2, ZBTB26, BRD4, JUND
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops