- Basic information
- CohesinDB ID: CDBP00418052
- Locus: chr21-35323256-35327545
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Data sourse: ENCSR000EFJ, ShirahigeLab-GSE177045, ENCSR230ZWH, GSE67783, GSE138405, GSE165895, ENCSR000HPG, ENCSR000BLY, ENCSR879KXD, ENCSR000EHW, ShirahigeLab-NatGen2015, ShirahigeLab, ENCSR000EHX, ENCSR153HNT, GSE138105, GSE68388, GSE50893, ENCSR917QNE
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Cell type: MCF-7, GM12892, RPE, Fibroblast, Hela-Kyoto, SLK, GM12878, GM12890, IMR-90, SK-N-SH, K-562, Liver, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 14% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 45%,
"7_Enh": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: T, ZKSCAN1, ZNF189
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops