- Basic information
- CohesinDB ID: CDBP00418053
- Locus: chr21-35328799-35330981
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Data sourse: ShirahigeLab-GSE177045, ShirahigeLab, ShirahigeLab-NatGen2015, ENCSR153HNT, GSE116344
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Cell type: MCF-7, RPE, Fibroblast, RH4, K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,NIPBL,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, BCL6, ZSCAN5D, ZNF263, NKX2-2, FOXA2, ZFX, ZNF317, ZBTB17, WT1, ZNF692, FOXA1, HOXB13, ERG, RELA, CREBBP, ZNF384, NFIC, ZBTB44, PRDM1, ARNT, HIF1A, NFIB, NKX2-1, MAFB, NKX3-1, ZNF143, TERF2, MED1, TLE3, NR3C1, ESRRA, SCRT2, CREB1, PIAS1, EZH2, ESR1, GRHL2, BCL6B, BAF155, AR, GATA2, EGLN2, SIX2, SCRT1, BRD4, PHIP, FOXP1, PRDM6, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops