- Basic information
- CohesinDB ID: CDBP00418055
- Locus: chr21-35335132-35335340
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Data sourse: GSE116344, ENCSR153HNT
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Cell type: K-562, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 76%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, MYOG, NCOA3, CBX3, IRF4, MYCN, RBM25, MAX, ZFX, MAZ, NFKB1, MYOD1, SMC3, RCOR1, SPIB, PDX1
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
- Related loop:
chr21:34350000-34375000~~chr21:35325000-35350000,
chr21:34889215-34891491~~chr21:35339729-35341143,
chr21:35050018-35052259~~chr21:35339447-35341148,
chr21:35050056-35052270~~chr21:35339729-35341143,
chr21:35050370-35052249~~chr21:35339746-35341172,
chr21:35050423-35052303~~chr21:35339770-35341171,
chr21:35050481-35052295~~chr21:35339683-35341161,
chr21:35050528-35052327~~chr21:35339764-35341191,
chr21:35226847-35228785~~chr21:35339309-35341219,