- Basic information
- CohesinDB ID: CDBP00418058
- Locus: chr21-35342411-35344597
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Data sourse: GSE206145-GSE177045, GSE72082, GSE98367, ENCSR879KXD, GSE206145, GSE68388, ENCSR703TNG, GSE25021, GSE50893
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Cell type: MCF-7, GM12892, GM2630, Macrophage, RPE, GM12891, K-562, HuCC-T1, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 57%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBX5, PGR, MEIS2, FOXA1, PBX2, NFIC, RUNX3, SMARCE1, BACH2, MAF, TEAD1, BCLAF1, TRIM28, KLF6, NFE2L2, ESR1, OCA2, CTCF, JUN, EP300, BAF155, GATA6, DPF2, E2F6, IRF4, TRIM24, SOX6, E2F1, TEAD4, EHMT2, RBPJ, TFAP2C, POU2F2, TOP2A, CTBP1, MTA2, ZSCAN5A, STAT1, SRF, NBN, HOXC5, ERG, ZNF597, NFKB2, MYC, SMARCA4, EOMES, ARID1B, RAD21, GRHL3, NKX2-1, BATF3, GABPA, STAT3, IKZF1, NFE2, RCOR1, CD74, ARNTL, NR3C1, CEBPB, STAT5B, CREB1, GRHL2, SPI1, IRF1, HDAC2, GATA2, RELB, ATF1, SMC1A, BCL6, HDAC1, AFF4, SIN3A, SMAD3, PRDM10, MEF2A, CREBBP, ZNF384, IRF2, NOTCH1, CDK6, GATA4, PBX4, ARNT, ATF2, ZEB2, HMBOX1, ETV6, CBFA2T3, ZNF10, FOS, CDK8, MED1, CEBPD, MYB, STAT5A, BCL11A, TFAP2A, REST, ZBTB7A, RBM25, ATF7, TCF3, FOXP1, BCOR, STAG1, MEF2B, MTA3, CREM, NFATC1, GTF2B, MAFF, MEF2C, HOXB13, YY1, RELA, JUNB, TCF4, HIF1A, GATA3, BATF, TAL1, MAX, SPIB, GATA1, NRIP1, KLF4, ZNF592, NCOA3, NR2F2, TP53, PKNOX1, NFKB1, EGR2, ELF3, TBX21, BHLHE40, AR, ZBTB40, RNF2, IKZF2, BRD4, JUND, MEF2D
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: Eosinophil_percentage_of_white_cells
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
- Related loop:
chr21:34350000-34375000~~chr21:35325000-35350000,
chr21:34889215-34891491~~chr21:35339729-35341143,
chr21:35050018-35052259~~chr21:35339447-35341148,
chr21:35050056-35052270~~chr21:35339729-35341143,
chr21:35050370-35052249~~chr21:35339746-35341172,
chr21:35050423-35052303~~chr21:35339770-35341171,
chr21:35050481-35052295~~chr21:35339683-35341161,
chr21:35050528-35052327~~chr21:35339764-35341191,
chr21:35226847-35228785~~chr21:35339309-35341219,