- Basic information
- CohesinDB ID: CDBP00418060
- Locus: chr21-35348755-35350266
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Data sourse: ENCSR000EFJ, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE165895
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Cell type: RPE, Fibroblast, IMR-90, K-562, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 63%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, BCL6, FOXA2, ZFX, HNF1A, FOXA1, HOXB13, ERG, RELA, ZNF384, PRPF4, RUNX2, MYC, GATA4, PBX4, HIF1A, ARNT, GATA3, HMGB2, PRDM9, UBN1, TP63, MED1, CDX2, NR3C1, CEBPB, SMAD5, ESR1, HNF1B, BAF155, ZBTB20, AR, GATA6, HNF4A, GATA2, MXI1, BRD4, PHIP, MAZ, TEAD4
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops