- Basic information
- CohesinDB ID: CDBP00418061
- Locus: chr21-35351031-35352777
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Data sourse: ENCSR000EFJ, ENCSR000HPG, GSE206145-NatGen2015, GSE68388, GSE116344, GSE165895
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Cell type: Fibroblast, RH4, IMR-90, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 61%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, TOP2A, SOX2, FOXA1, SMARCC1, RELA, RUNX2, MYC, NKX2-1, BATF3, MAX, TP63, FOS, CDK8, ZNF143, NR3C1, CEBPB, TEAD1, MYB, TP53, TP73, USF2, USF1, AR, RAD51, BRD4
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops