- Basic information
- CohesinDB ID: CDBP00418066
- Locus: chr21-35363906-35364263
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, POU2F2, PPARG, CHD8, ZFX, XBP1, ZNF692, FOXA1, ERG3, ERG2, RELA, ZNF90, ATF3, RUNX2, CDK6, NKX2-1, ATF2, STAT3, NRIP1, ZNF143, PRDM14, ARNTL, TEAD1, TRIM28, EZH2, ESR1, OCA2, EGR2, CTCF, AR, ATF7, NOTCH3, JUND
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops