Browse_each

Basic information

CohesinDB ID: CDBP00418069

Locus: chr21-35371312-35371875

Data sourse: ENCSR000BLD, GSE206145-GSE177045

Cell type: MCF-7, H1-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Mau2,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 81% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 86%, "5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, POU2F2, FOXA2, POU5F1, NKX2-2, CEBPA, XBP1, FOXA1, ZNF205, ERG3, ZNF485, ERG2, CDK9, KDM1A, ZNF19, RELA, YY1, ZNF384, CREBBP, GATA4, PRDM1, DAXX, ARNT, HIF1A, PROX1, GRHL3, GATA3, TAL1, PAX5, NRIP1, RCOR1, ARNTL, CEBPG, CEBPB, NCOA3, ZMYM3, EZH2, TP53, ESR1, EGR2, CTCF, AR, GATA2, RBM25, SIX2, BRD4, BCOR, ZNF24

Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159216,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00418069

CDBP00418069 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00418069

Current terms

Suggested terms

Custom term