- Basic information
- CohesinDB ID: CDBP00418072
- Locus: chr21-35373913-35374287
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAFG, ATF3, JUND, C11orf30, MAFK, NFE2, ZNF316, DACH1
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
- Related loop:
chr21:34350000-34375000~~chr21:35350000-35375000,
chr21:34700000-34725000~~chr21:35375000-35400000,
chr21:34775000-34800000~~chr21:35350000-35375000,
chr21:34850000-34875000~~chr21:35375000-35400000,
chr21:34875000-34900000~~chr21:35350000-35375000,
chr21:34875000-34900000~~chr21:35375000-35400000,
chr21:34889215-34891491~~chr21:35367866-35369303,
chr21:34889251-34892128~~chr21:35374172-35375997,
chr21:34900000-34925000~~chr21:35375000-35400000,
chr21:35025000-35050000~~chr21:35375000-35400000,
chr21:35050000-35075000~~chr21:35375000-35400000,
chr21:35050353-35052253~~chr21:35377042-35378670,
chr21:35050390-35052342~~chr21:35374616-35376147,
chr21:35125000-35150000~~chr21:35375000-35400000,
chr21:35200000-35225000~~chr21:35375000-35400000,
chr21:35225000-35250000~~chr21:35350000-35375000,
chr21:35250000-35275000~~chr21:35375000-35400000,
chr21:35275000-35300000~~chr21:35375000-35400000,
chr21:35350000-35375000~~chr21:35825000-35850000,
chr21:35375000-35400000~~chr21:35825000-35850000,