Browse_each

Basic information

CohesinDB ID: CDBP00418077

Locus: chr21-35392967-35393548

Data sourse: GSE206145, GSE116344, GSE206145-NatGen2015, GSE67783

Cell type: RPE, Fibroblast, RH4, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 81% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 73%, "5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, ZNF468, RUNX1T1, ZFX, XBP1, KDM1A, ERG, RAD21, ZIC2, ARNT, ATF2, JMJD1C, TRIM28, EVI1, TCF12, BCL11A, SPI1, AR, FLI1, BRD4, JUND, TCF3

Target gene symbol (double-evidenced CRMs): RUNX1,CLIC6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159212, ENSG00000159216,

eachgene

Deatailed information for cohesin site CDBP00418077