- Basic information
- CohesinDB ID: CDBP00418093
- Locus: chr21-35438402-35439434
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Data sourse: ENCSR000BLD, GSE98367, GSE105028, GSE206145-NatGen2015, GSE206145, GSE50893, ENCSR153HNT, GSE68388, GSE83726, GSE116344, GSE108869, ENCSR000ECS
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Cell type: GM12892, H1-hESC, Fibroblast, Macrophage, RH4, GM18505, HEK293T, GM19240, GM12878, GM12891, GM2588, HeLa-S3, K-562, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"7_Enh": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, CBX5, MEIS2, XBP1, FOXA1, PBX2, ATF3, RUNX3, TP63, CDX2, MAF, MYOG, TEAD1, TRIM28, BCLAF1, OCA2, MLL, CTCF, TCF12, GATA6, DPF2, IRF4, TRIM24, SOX6, TEAD4, PDX1, TFAP2C, EED, POU2F2, MYCN, CTBP1, ZSCAN21, MTA2, ZBTB17, STAT1, ERG, MYC, SMARCA4, ARID1B, RAD21, PROX1, STAT3, IKZF1, RCOR1, ARNTL, VDR, CEBPB, KMT2A, CREB1, EZH2, ZNF652, SPI1, GATA2, FLI1, ZNF490, ZNF766, ATF1, RUNX1, CBX1, HDAC1, SOX13, ZFX, SMARCC1, MEF2A, CREBBP, ZNF35, GATA4, PBX4, ATF2, PRDM9, ZEB2, PBX3, CBFA2T3, FOS, CDK8, MED1, MYB, ZMYM3, BCL11A, SP1, HNF4A, REST, ATF7, SMC3, FOXA2, MTA3, EBF1, MEF2C, CDK9, RELA, JUNB, TCF4, OTX2, GATA3, MAX, SPIB, GATA1, GFI1B, TP53, PKNOX1, NFKB1, MYOD1, ARRB1, TBX21, AR, RNF2, IKZF2, JUND, BRD4, NOTCH3, CUX1, ZNF316
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops