- Basic information
- CohesinDB ID: CDBP00418095
- Locus: chr21-35441797-35442323
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Data sourse: ENCSR000BLD, GSE104888, ENCSR000BKV, GSE110061, ENCSR000BLY, ENCSR879KXD, GSE105028, ENCSR000ECE, GSE50893, ENCSR703TNG, GSE25021, GSE108869
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Cell type: MCF-7, GM12892, H1-hESC, HCT-116, HeLa-S3, SK-N-SH, K-562, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, SMC1A, POU2F2, CEBPA, EZH2phosphoT487, E2F7, CRY1, FOXA2, ZFX, BRD1, XBP1, ZSCAN5D, DUX4, POU4F2, SRF, SUZ12, ZNF19, RELA, YY1, ZNF169, MYC, MCM5, ZKSCAN2, RAD21, MCM3, HIF1A, ZNF143, ARNTL, CEBPB, TRIM28, CREB1, EZH2, ESR1, OCA2, CTCF, TCF12, BCL11A, MNT, AR, IRF1, SSRP1, JUND, CLOCK, E2F1, MAZ, ZNF24, STAG1
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops