- Basic information
- CohesinDB ID: CDBP00418098
- Locus: chr21-35450543-35451023
-
Data sourse: GSE67783, GSE111913, ENCSR153HNT
-
Cell type: K-562, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"9_Het": 47%,
"15_Quies": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CBX5, CBX1, CBX3, ZSCAN5D, ZFX, XBP1, ZBTB33, TBP, ZBTB7B, CEBPZ, RELA, ZNF585B, GRHL3, ZFP36, MAX, CHD1, DNMT3B, NR3C1, TRIM28, SETDB1, TRIM24, BRD4, MAZ, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops