- Basic information
- CohesinDB ID: CDBP00418100
- Locus: chr21-35461442-35461996
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Data sourse: GSE138405, ENCSR879KXD
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Cell type: K-562, Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, FOSL1, MAFG, HDAC1, POU5F1, ID3, MEIS2, NME2, ZNF317, ZBTB48, MAFF, FOXA1, PBX2, ZNF300, YY1, RELA, ATF3, ONECUT1, MYC, CHAMP1, SMARCA4, ARID1B, RAD21, CHD7, NRF1, BACH1, RXRA, NKX2-1, SMARCE1, PBX3, GATA1, CDK8, NFE2, HDAC3, MED1, ZNF639, CEBPB, ZNF592, TRIM28, SCRT2, NFE2L2, PKNOX1, C11orf30, GRHL2, NFE2L1, PHOX2B, MAFK, SPI1, SP1, EP300, NR4A1, HNF4A, MNT, PYGO2, DPF2, BCL11A, GATA2, GATAD2B, CREB3, ATF7, RNF2, SCRT1, ILF3, BRD4, JUND, ZNF350, EP400, TEAD4, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops