- Basic information
- CohesinDB ID: CDBP00418116
- Locus: chr21-35497205-35497383
-
Data sourse: GSE206145-NatGen2015, GSE131577
-
Cell type: Fibroblast, HL-60
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 85%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:34350000-34375000~~chr21:35500000-35525000,
chr21:34675000-34700000~~chr21:35500000-35525000,
chr21:34700000-34725000~~chr21:35500000-35525000,
chr21:34725000-34750000~~chr21:35500000-35525000,
chr21:34750000-34775000~~chr21:35500000-35525000,
chr21:34775000-34800000~~chr21:35500000-35525000,
chr21:34850000-34875000~~chr21:35500000-35525000,
chr21:34875000-34900000~~chr21:35500000-35525000,
chr21:35025000-35050000~~chr21:35500000-35525000,
chr21:35050000-35075000~~chr21:35500000-35525000,
chr21:35250000-35275000~~chr21:35500000-35525000,
chr21:35400000-35425000~~chr21:35500000-35525000,
chr21:35500000-35525000~~chr21:35775000-35800000,
chr21:35500000-35525000~~chr21:35825000-35850000,
chr21:35500000-35525000~~chr21:35925000-35950000,
chr21:35500000-35525000~~chr21:36025000-36050000,