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Basic information

CohesinDB ID: CDBP00418117

Locus: chr21-35498744-35499817

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE72082, GSE86191, GSE111913, GSE105028, GSE206145-NatGen2015, GSE206145, ENCSR153HNT, GSE130135, GSE116344, GSE38411

Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, RH4, HEK293T, Hep-G2, RT-112, K-562, BCBL-1, HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.856

Subunit: SA1,Rad21,SMC1,SA2,Mau2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: non-Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 81% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 75%, "14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX8, YY1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00418117