- Basic information
- CohesinDB ID: CDBP00418120
- Locus: chr21-35505097-35505408
-
Data sourse: ENCSR000BLD, ENCSR000BLY, GSE105028, GSE206145-NatGen2015, ENCSR153HNT
-
Cell type: H1-hESC, Fibroblast, SK-N-SH, K-562, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 29%,
"7_Enh": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, CHD8, BRD1, TBL1X, POU5F1, MYCN, SOX2, ZFX, POU4F2, XBP1, ZBTB48, WT1, STAT1, TET2, ERG, ZNF384, PBX1, RUNX2, CHD7, SP140, ZNF143, IKZF1, TRIM28, TP53, BRD4, CTBP2, TCF3, SCRT1
- Target gene symbol (double-evidenced CRMs): SETD4,SMIM11A,RUNX1,CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:35500000-35525000,
chr21:34675000-34700000~~chr21:35500000-35525000,
chr21:34692249-34694404~~chr21:35507719-35509586,
chr21:34692433-34694405~~chr21:35507807-35509535,
chr21:34692474-34694411~~chr21:35507809-35509924,
chr21:34700000-34725000~~chr21:35500000-35525000,
chr21:34718892-34720426~~chr21:35507719-35509586,
chr21:34722039-34723826~~chr21:35507813-35509465,
chr21:34725000-34750000~~chr21:35500000-35525000,
chr21:34743262-34746775~~chr21:35507734-35509545,
chr21:34743265-34746806~~chr21:35507719-35509586,
chr21:34744447-34746791~~chr21:35507750-35509614,
chr21:34744539-34746791~~chr21:35507739-35509404,
chr21:34744552-34746822~~chr21:35507858-35509465,
chr21:34744574-34746750~~chr21:35507769-35509498,
chr21:34744589-34746918~~chr21:35507735-35509518,
chr21:34744610-34746779~~chr21:35507406-35509556,
chr21:34744777-34746623~~chr21:35507640-35509736,
chr21:34744787-34746612~~chr21:35507728-35509232,
chr21:34744790-34746552~~chr21:35507844-35509236,
chr21:34744820-34746780~~chr21:35507828-35509473,
chr21:34744840-34746785~~chr21:35507813-35509465,
chr21:34744866-34746754~~chr21:35507843-35509232,
chr21:34744927-34746749~~chr21:35507798-35509438,
chr21:34750000-34775000~~chr21:35500000-35525000,
chr21:34775000-34800000~~chr21:35500000-35525000,
chr21:34800561-34802971~~chr21:35507813-35509465,
chr21:34800995-34802442~~chr21:35507809-35509924,
chr21:34850000-34875000~~chr21:35500000-35525000,
chr21:34875000-34900000~~chr21:35500000-35525000,
chr21:34887552-34891083~~chr21:35507875-35509392,
chr21:34887599-34888886~~chr21:35507802-35509464,
chr21:34888113-34891105~~chr21:35507813-35509282,
chr21:34888151-34890935~~chr21:35507640-35509736,
chr21:34888177-34892032~~chr21:35507839-35509185,
chr21:34888362-34892029~~chr21:35507701-35509916,
chr21:34889120-34891504~~chr21:35507809-35509924,
chr21:34889215-34891125~~chr21:35507798-35509438,
chr21:34889220-34892087~~chr21:35507756-35509525,
chr21:34889226-34891333~~chr21:35507750-35509614,
chr21:34889230-34891145~~chr21:35507406-35509556,
chr21:34889242-34892124~~chr21:35507767-35509947,
chr21:34889251-34892128~~chr21:35507734-35509545,
chr21:34889261-34891776~~chr21:35507740-35509497,
chr21:34889265-34891088~~chr21:35507802-35509464,
chr21:34889270-34892070~~chr21:35507719-35509586,
chr21:34889280-34892057~~chr21:35507840-35509928,
chr21:34889298-34892087~~chr21:35507789-35509940,
chr21:34889367-34892315~~chr21:35507729-35509950,
chr21:34889427-34892109~~chr21:35507807-35509535,
chr21:34889513-34890925~~chr21:35507897-35509157,
chr21:35025000-35050000~~chr21:35500000-35525000,
chr21:35046384-35049002~~chr21:35507729-35509950,
chr21:35050000-35075000~~chr21:35500000-35525000,
chr21:35050328-35052241~~chr21:35507767-35509947,
chr21:35050375-35052249~~chr21:35507829-35509267,
chr21:35250000-35275000~~chr21:35500000-35525000,
chr21:35400000-35425000~~chr21:35500000-35525000,
chr21:35431113-35432519~~chr21:35507406-35509556,
chr21:35500000-35525000~~chr21:35775000-35800000,
chr21:35500000-35525000~~chr21:35825000-35850000,
chr21:35500000-35525000~~chr21:35925000-35950000,
chr21:35500000-35525000~~chr21:36025000-36050000,
chr21:35507719-35509586~~chr21:35838715-35841129,
chr21:35507719-35509586~~chr21:35984012-35986224,
chr21:35507729-35509950~~chr21:35838730-35841126,
chr21:35507734-35509545~~chr21:35838780-35841161,
chr21:35507734-35509545~~chr21:35984106-35986257,
chr21:35507735-35509518~~chr21:35939353-35941240,
chr21:35507739-35509404~~chr21:36027276-36029656,
chr21:35507828-35509473~~chr21:36027356-36029689,