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Basic information

CohesinDB ID: CDBP00418122

Locus: chr21-35517685-35518236

Data sourse: ENCSR879KXD

Cell type: K-562

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 80% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 79%, "14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, CHD8, ZFX, CTBP1, STAT1, UBTF, ZKSCAN1, SMARCA4, ARID1B, GRHL3, ZFP36, TAL1, MAX, CBFA2T3, GATA1, IKZF1, RCOR1, CEBPB, GFI1B, EP300, GATA2, SOX6, NCOR1, ILF3, EED

Target gene symbol (double-evidenced CRMs): SETD4,RUNX1,CLIC6,SMIM11A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159212, ENSG00000159216, ENSG00000185917,

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Deatailed information for cohesin site CDBP00418122