Browse_each

Basic information

CohesinDB ID: CDBP00418124

Locus: chr21-35524410-35526641

Data sourse: ENCSR000BKV, GSE85526, GSE206145-NatGen2015, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE116344, GSE126755, ENCSR000ECS

Cell type: Fibroblast, RH4, HEKn, HeLa-S3, K-562, Neutrophil, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.922

Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 80% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 50%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, NFIA, GATA2, NFIC, EBF1, ZNF184, PIAS1, NFIB, GRHL3, DAXX, FOXP1, FOXA1, HOXB13, BAF155, ERG

Target gene symbol (double-evidenced CRMs): SETD4,RUNX1,CLIC6,SMIM11A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159212, ENSG00000159216, ENSG00000185917,

eachgene

Deatailed information for cohesin site CDBP00418124