- Basic information
- CohesinDB ID: CDBP00418134
- Locus: chr21-35571908-35572282
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Data sourse: GSE206145, GSE206145-NatGen2015
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Cell type: Fibroblast, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 78%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU5F1, LMO2, GATA3, PRDM9, CBX8, TERF2
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
- Related loop:
chr21:34350000-34375000~~chr21:35550000-35575000,
chr21:34350000-34375000~~chr21:35575000-35600000,
chr21:34675000-34700000~~chr21:35575000-35600000,
chr21:34875000-34900000~~chr21:35575000-35600000,
chr21:35250000-35275000~~chr21:35550000-35575000,
chr21:35250000-35275000~~chr21:35575000-35600000,
chr21:35300000-35325000~~chr21:35550000-35575000,
chr21:35400000-35425000~~chr21:35575000-35600000,
chr21:35450000-35475000~~chr21:35550000-35575000,
chr21:35450000-35475000~~chr21:35575000-35600000,
chr21:35575000-35600000~~chr21:35825000-35850000,
chr21:35575000-35600000~~chr21:36025000-36050000,