- Basic information
- CohesinDB ID: CDBP00418137
- Locus: chr21-35580481-35581036
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Data sourse: ENCSR153HNT, ENCSR879KXD
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 60%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, ZNF391, PGR, ZNF426, HMG20A, ZNF660, E2F7, ZNF621, MEIS2, NME2, XBP1, SOX2, ZSCAN5C, ZNF101, FOXA1, PATZ1, HLF, PBX2, RXRB, ZFHX2, ZNF596, INSM2, ATF3, NFIC, ZFP64, ZNF362, CHD7, ZBTB44, PRDM1, IKZF3, RUNX3, KLF14, ATF4, MXD4, ZNF189, ZSCAN4, MITF, BACH2, CDX2, ZNF629, MAF, TEAD1, ZNF121, TRIM28, ZNF26, KLF6, NFE2L2, KLF10, ZNF624, ESR1, OCA2, HNF1B, HDAC8, USF2, ZNF561, JUN, TCF12, CTCF, EP300, SND1, ZNF577, BAF155, SOX5, DPF2, PAX8, PRDM4, TRIM24, IRF4, CREB3, E2F4, ZNF423, E2F1, ZNF528, ZNF350, TEAD4, ZNF92, FOXA3, GATAD2A, PDX1, TFAP2C, EHMT2, RBPJ, MLX, GLIS1, POU2F2, BRD3, HHEX, ZNF778, CDK7, ID3, POU5F1, ZSCAN21, ZBTB17, DUX4, ZSCAN5A, ZBTB1, ERF, KDM4C, ZNF488, ZNF317, SAP130, ERG2, ARID3A, HIC1, SP4, ERG, ZBTB21, KLF4, ZBTB8A, MYC, ONECUT1, SMARCA4, ZNF2, ARID1B, RAD21, GRHL3, RXRA, BATF3, STAT3, XRCC5, ZNF398, IKZF1, RCOR1, NFE2, ZNF639, NFRKB, VDR, NR2F6, NR3C1, CEBPB, ZNF750, ESRRA, KMT2A, CREB1, EZH2, KLF8, GRHL2, FEZF1, ZNF652, SPI1, ZNF664, MIXL1, TFE3, IRF1, HDAC2, GATA2, ZNF644, ZNF146, FLI1, NR2C2, ZNF76, SALL2, RUNX1, MAFG, BCL6, CEBPA, CRY1, AFF4, ZFX, SOX13, SMAD3, CBX8, ERG3, ZNF513, SMARCC1, ZNF18, PRDM10, MYBL2, RARA, ZNF384, ZNF35, RUNX2, CDK6, ZSCAN30, OSR2, ZNF184, GATA4, SMAD2, NRF1, PBX4, ARNT, BACH1, ATF2, PRDM9, ZEB2, ZNF518A, SMAD4, PBX3, FOXM1, SP2, CHD1, FOS, CDK8, ZNF10, CBFA2T3, MED1, TEAD3, ZEB1, ZXDB, MYB, SCRT2, CEBPD, ZMYM3, KLF9, C11orf30, L3MBTL2, NUP98-HOXA9, USF1, MAFK, BCL11A, SP1, NR4A1, HNF4A, REST, ZBTB7A, GLI2, ZNF479, RBM25, OVOL3, POU2F3, PHIP, BCOR, FOXP1, PRDM6, ZNF623, SMC3, ELL2, ZNF34, ZNF394, PAX7, SKI, KLF13, MEF2B, FOXA2, MTA3, PPARG, CHD2, SS18, TBL1X, ZNF600, ZNF692, GTF2B, MAFF, WT1, FOXF1, ZNF662, ZBTB33, TCF7, CDK9, YY2, HOXB13, ZNF580, KLF7, KDM1A, YY1, RELA, ZNF19, JUNB, ZNF148, KAT2B, ZIC2, HIF1A, GATA3, BATF, MGA, TAL1, MAX, SPIB, ZNF143, GATA1, ZNF449, NRIP1, CBX2, CEBPG, ZFP69B, SP7, GFI1B, NR2F2, NCOA3, ZNF592, ZNF544, NR2F1, TCF7L2, BCL11B, SMAD1-5-8, ZBTB6, ZNF213, PKNOX1, ZNF334, BCL6B, NFKB1, EGR2, PHOX2B, BRD2, ZNF843, ELF3, BHLHE40, AR, TAF1, ZBTB40, ZNF324, ZNF366, EGR1, RNF2, NOTCH3, BRD4, JUND, SCRT1, CUX1, MAZ, ZSCAN23, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): RUNX1,SETD4,SMIM11A,CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:35575000-35600000,
chr21:34675000-34700000~~chr21:35575000-35600000,
chr21:34875000-34900000~~chr21:35575000-35600000,
chr21:34889242-34892124~~chr21:35577853-35579865,
chr21:35250000-35275000~~chr21:35575000-35600000,
chr21:35400000-35425000~~chr21:35575000-35600000,
chr21:35450000-35475000~~chr21:35575000-35600000,
chr21:35564654-35566105~~chr21:35577841-35579835,
chr21:35575000-35600000~~chr21:35825000-35850000,
chr21:35575000-35600000~~chr21:36025000-36050000,