- Basic information
- CohesinDB ID: CDBP00418142
- Locus: chr21-35592466-35593947
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Data sourse: ENCSR000EFJ, GSE138405, ENCSR000HPG, ENCSR000BLY, GSE105028, GSE206145-NatGen2015, GSE206145, ENCSR000EDE, GSE130135, GSE126990, GSE108869, ENCSR000ECS, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, HEK293T, HeLa-S3, IMR-90, SK-N-SH, HFFc6, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC3ac,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 45%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, ZNF660, SOX2, PATZ1, FOXA1, INSM2, NFIC, ATF3, ZFP64, ZBTB44, CHD7, IKZF3, PRDM1, KLF14, ZNF189, MZF1, CDX2, ZNF629, TEAD1, TRIM28, KLF6, SNAI2, KLF10, MLL, HNF1B, OCA2, ZNF561, CTCF, TCF12, JUN, EP300, GATA6, DEK, ZNF528, TEAD4, NANOG, POU2F2, ZNF263, POU5F1, BRD3, TOP2A, ZNF317, ZBTB17, ZBTB48, ZSCAN21, ZNF205, ERG, ZBTB21, ZBTB8A, ZNF341, ONECUT1, MYC, TSHZ1, ZNF2, RAD21, GRHL3, PROX1, NKX2-1, STAT3, RCOR1, ZNF639, NR3C1, CEBPB, ZNF750, KLF8, FEZF1, ZNF652, SPI1, ZNF664, IRF1, GATA2, RELB, ZIM3, RUNX1, ZBTB24, SMAD3, ERG3, SMARCC1, PRDM10, ZNF35, RUNX2, GATA4, OSR2, ZNF184, ARNT, PBX4, SOX11, NRF1, ZEB2, ZNF518A, PBX3, ZNF10, FOS, MED1, ZEB1, DIDO1, ZXDB, ZNF558, STAT5A, NUP98-HOXA9, BCL11A, ZBTB7A, GLI2, ZHX1, PHIP, PRDM6, SMC3, ZNF394, KLF13, FOXA2, CHD2, ZNF600, ZNF692, ZSCAN16, WT1, FOXF1, ZNF574, CDK9, ZNF19, RELA, JUNB, GATA3, TAL1, MAX, GATA1, KLF4, ZFP69B, SP7, GFI1B, NR2F2, ZNF512, TCF7L2, TP53, ZNF213, BCL6B, NFKB1, ELF3, ZNF843, BRD2, BHLHE40, AR, ZNF324, BRD4, JUND, ZSCAN23, ZNF24, FOSL2
- Target gene symbol (double-evidenced CRMs): RUNX1,SETD4,SMIM11A,CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:35575000-35600000,
chr21:34675000-34700000~~chr21:35575000-35600000,
chr21:34875000-34900000~~chr21:35575000-35600000,
chr21:35250000-35275000~~chr21:35575000-35600000,
chr21:35400000-35425000~~chr21:35575000-35600000,
chr21:35450000-35475000~~chr21:35575000-35600000,
chr21:35575000-35600000~~chr21:35825000-35850000,
chr21:35575000-35600000~~chr21:36025000-36050000,