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Basic information

CohesinDB ID: CDBP00418150

Locus: chr21-35608993-35609625

Data sourse: GSE101921, GSE67783, ENCSR153HNT

Cell type: K-562, HMEC, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,SA2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 80% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 68%, "14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX3-FOXO1, RELA, NCOA3, BCL11A, RUNX2, POU5F1, ZFX, WT1, CTCF, CLOCK, ZNF189, ELL2, HOXB13, SPI1, STAG1

Target gene symbol (double-evidenced CRMs): CLIC6,RCAN1,RUNX1,SMIM11A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159200, ENSG00000159212, ENSG00000159216,

eachgene

Deatailed information for cohesin site CDBP00418150