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Basic information

CohesinDB ID: CDBP00418155

Locus: chr21-35622783-35623071

Data sourse: GSE105028, ENCSR153HNT

Cell type: K-562, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 80% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 62%, "14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NANOG, PGR, POU2F2, POU5F1, TOP2A, SOX2, ZFX, XBP1, FOXA1, YY1, RUNX2, CDK6, MYC, CHD7, APC, SPIB, SCRT2, SP1, NOTCH3, BRD4, TFAP2C, EED

Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A,CLIC6,RCAN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159200, ENSG00000159212, ENSG00000159216,

eachgene

Deatailed information for cohesin site CDBP00418155