- Basic information
- CohesinDB ID: CDBP00418173
- Locus: chr21-35672410-35672719
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Data sourse: GSE118494, GSE67783
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Cell type: HSPC, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 65%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, RUNX1T1, RAD21, EZH2, ZFX, WT1, BRD4, MAZ, SMC3, CTCF, STAG1
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
- Related loop:
chr21:34300000-34325000~~chr21:35675000-35700000,
chr21:34350000-34375000~~chr21:35650000-35675000,
chr21:34350000-34375000~~chr21:35675000-35700000,
chr21:35510785-35512091~~chr21:35676592-35678756,
chr21:35650000-35675000~~chr21:35825000-35850000,
chr21:35650000-35675000~~chr21:35925000-35950000,
chr21:35674462-35675960~~chr21:35839090-35841121,
chr21:35675000-35700000~~chr21:35775000-35800000,
chr21:35675000-35700000~~chr21:35825000-35850000,
chr21:35675000-35700000~~chr21:35925000-35950000,
chr21:35675000-35700000~~chr21:36025000-36050000,