- Basic information
- CohesinDB ID: CDBP00418177
- Locus: chr21-35682002-35682639
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Data sourse: GSE116344, GSE50893, GSE111913, GSE206145-NatGen2015
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Cell type: RT-112, Fibroblast, RH4, GM18505
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, POU5F1, TOP2A, SIN3A, ZFX, ZNF692, ZNF317, XBP1, DUX4, STAT1, FOXA1, CDK9, PRDM10, ERG, YY1, RELA, CREBBP, NFIC, MYC, ONECUT1, RAD21, GRHL3, HIF1A, ATF4, RXRA, GATA3, STAT3, TAL1, PBX3, ZNF143, GATA1, MED1, CEBPG, PIAS1, TP53, ESR1, GRHL2, ZNF334, NFKB1, TCF12, SP1, HNF4A, AR, REST, GATA2, TRIM24, IRF4, JUND, BRD4
- Target gene symbol (double-evidenced CRMs): SMIM11A,SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops