- Basic information
- CohesinDB ID: CDBP00418179
- Locus: chr21-35692963-35693500
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 47%,
"15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, SMC1A, POU2F2, POU5F1, MYCN, RUNX1T1, CRY1, ZFX, XBP1, ZBTB48, ZSCAN5A, WT1, FOXA1, CBX8, CDK9, HOXB13, ERG, YY1, RELA, JUNB, NFKB2, MYC, RAD21, SP140, NKX2-1, PRDM9, GABPA, BATF, MAX, ETV6, ZNF143, GATA1, CEBPB, ETV1, PIAS1, EZH2, TP53, USF2, NFKB1, ELF3, CTCF, AR, GATA2, E2F6, IRF4, FLI1, BRD4, MAZ, SMC3, STAG1, AHR, EED
- Target gene symbol (double-evidenced CRMs): SMIM11A,SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops