- Basic information
- CohesinDB ID: CDBP00418189
- Locus: chr21-35718972-35719471
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Data sourse: ENCSR230ZWH
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 48%,
"15_Quies": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, FOXO1, PGR, FOXA2, ZSCAN5C, CHD2, CDK7, ZFX, DUX4, FOXA1, MLLT3, MEF2C, CDK9, YY1, RELA, NOTCH1, NFIC, MYC, SMARCA4, RAD21, ARNT, HIF1A, RXRA, GATA3, BATF3, GABPA, APC, STAT3, PBX3, SOX10, GATA1, CDK8, NKX3-1, MITF, MED1, NR3C1, CEBPB, NR2F2, TRIM28, MYB, TFAP2C, KDM5B, MLL, ZNF334, SP1, SPI1, BCL11A, HNF4A, AR, TAF1, REST, GATA2, IRF4, EGR1, POU2F3, SCRT1, BRD4, NCOA2, KMT2B, RBPJ
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops