- Basic information
- CohesinDB ID: CDBP00418192
- Locus: chr21-35730108-35730692
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Data sourse: ENCSR000BLD, ENCSR000BKV, GSE110061, GSE129526, GSE105028, ENCSR000ECE, GSE68388, GSE108869
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Cell type: H1-hESC, HCT-116, HeLa-S3, K-562, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 61%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, RELA, ZNF384, POU2F2, MYC, ZNF362, SCRT2, ZFX, EZH2, ARNT, GRHL3, SCRT1, NME2, RAD21, FOXA1, CTCFL, ZNF22, CTCF
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops