- Basic information
- CohesinDB ID: CDBP00418193
- Locus: chr21-35733278-35733627
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Data sourse: GSE132649, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, T-47D, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZFX, XBP1, GTF2B, FOXA1, HOXB13, ERG, RELA, RUNX2, MCM5, PBX4, GRHL3, ARNT, HIF1A, NKX2-1, GABPA, MAF1, TAL1, XRCC5, STAT3, ZNF143, CDX2, KLF4, CEBPB, NCOA3, EZH2, ESR1, OCA2, ZBTB6, GRHL2, CTCF, ELF3, BAF155, SPI1, MNT, AR, ZNF479, ARID1A, ASH2L, NOTCH3, FOXP1, STAG1
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops