- Basic information
- CohesinDB ID: CDBP00418197
- Locus: chr21-35743586-35743845
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Data sourse: GSE165895
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Cell type: HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, ZSCAN5C, ZNF660, XBP1, PATZ1, FOXA1, MLL4, ZFHX2, TFAP4, ATF3, NFIC, INSM2, CHD7, PRDM1, IKZF3, ZNF429, ZNF189, TP63, ZSCAN4, JMJD1C, ZNF629, MAF, TEAD1, TRIM28, KLF6, SNAI2, KLF10, LMO2, HNF1B, USF2, ZNF561, CTCF, JUN, TCF12, EP300, KLF1, SOX4, IRF4, RFX5, DEK, E2F4, E2F1, TEAD4, GTF2F1, TFAP2C, GLIS1, POU2F2, POU5F1, ZNF263, MYCN, ZSCAN21, ZBTB17, DUX4, ZNF317, STAT1, ZBTB48, SRF, DDX5, ERG2, HIC1, ERG, HOXC5, ZBTB21, ZNF341, ETS1, MYC, SMARCA4, TSHZ1, RAD21, PROX1, NKX2-1, GABPA, STAT3, RCOR1, ZNF639, NR3C1, CEBPB, EZH2, KLF8, ZHX2, SPI1, EHF, IRF1, KLF17, ZNF554, MAFG, ZBTB24, SMC1A, SIN3A, ZFX, SMAD3, ZFP37, ERG3, SMARCC1, PRDM10, ZNF549, ZNF384, RUNX2, CDK6, OSR2, ZNF184, PBX4, NFIB, NRF1, PRDM9, ZEB2, ZNF518A, PBX3, ZNF10, FOS, CDK8, MED1, ZEB1, ZXDB, SCRT2, NR1H2, KLF9, MAFK, USF1, NIPBL, SP1, REST, ZHX1, PHIP, SMC3, ELL2, ZNF394, PPARG, FOXA2, CBX3, CHD2, PAF1, SS18, ZNF600, ZNF692, MAFF, WT1, ZNF30, ZNF574, ZBTB33, HOXB13, KDM1A, YY1, RELA, JUNB, MCM3, ZIC2, HIF1A, GATA3, BATF, MAX, ZFP69B, KLF4, SP7, TCF7L2, TP53, ZSCAN22, BCL6B, EGR2, MYOD1, ELF3, BRD2, ZNF843, NFKB1, BHLHE40, AR, TAF1, YAP1, ZNF324, ZNF366, EGR1, ZBTB26, NCOR1, MYNN, BRD4, JUND, SCRT1, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops