- Basic information
- CohesinDB ID: CDBP00418209
- Locus: chr21-35776196-35776741
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Data sourse: ENCSR000EDE, GSE85526, ENCSR000ECS, GSE138405
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Cell type: HeLa-S3, Hela-Kyoto, HEKn
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 59%,
"14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, POU5F1, NME2, ZNF317, SMAD3, STAT1, FOXA1, HOXB13, KDM1A, ERG, RELA, CREBBP, JUNB, AHR, MYC, RAD21, PRDM1, PBX4, NRF1, ARNT, GATA3, PRDM9, STAT3, PAX5, TP63, NRIP1, FOS, RCOR1, ZNF750, CEBPB, KLF4, ETV1, PIAS1, ESR1, TP53, KLF8, GRHL2, CTCF, JUN, BAF155, EP300, EHF, AR, GATA2, JUND, PHIP, NCOA2, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops