- Basic information
- CohesinDB ID: CDBP00418212
- Locus: chr21-35796791-35798263
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Data sourse: GSE138405, ENCSR000BLY, GSE206145, ENCSR000EDE, GSE126990, ENCSR000ECS
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Cell type: HeLa-S3, Hela-Kyoto, HEK293T, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, ZNF394, NFIA, CHD8, ZBTB24, FOXA2, LDB1, POU5F1, TOP2A, SOX2, ZNF317, XBP1, SMAD3, DUX4, STAT1, FOXA1, FOXF1, ZNF692, ERG3, HOXB13, PRDM10, ERG, ZNF300, RELA, ZNF35, ZNF384, ZNF341, ONECUT1, NFIC, SMARCA4, GATA4, ZNF184, MYC, NRF1, PBX4, GRHL3, RXRA, ARNT, GATA3, GABPA, STAT3, PBX3, TAL1, MAX, UBN1, CDX2, NR3C1, CEBPB, KLF4, KLF5, NR2F2, ZFP69B, ETV1, PIAS1, SCRT2, KDM5B, ZNF334, BRD2, CTCF, BAF155, EP300, SPI1, AR, GATA2, YAP1, BRD4, PHIP, PRDM6, ZNF350, SMC3, NCOR2, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops