- Basic information
- CohesinDB ID: CDBP00418216
- Locus: chr21-35811009-35811533
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE67783, ENCSR000BKV, GSE72082, GSE86191, GSE129526, ENCSR000BLY, GSE105028, ENCSR000ECE, ENCSR153HNT, GSE68388, GSE116344, GSE25021, GSE50893, GSE97394
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Cell type: MCF-7, GM2630, H1-hESC, HCT-116, RH4, Hep-G2, HUES64, SK-N-SH, K-562, HSPC, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 76%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, CEBPA, TBL1X, POU5F1, MYCN, SOX2, POU4F2, XBP1, WT1, FOXA1, ERG3, ERG2, YY1, RELA, ATF3, SMARCA4, RAD21, SP140, GRHL3, HIF1A, CHD7, RXRA, GATA3, SMC3, STAT3, APC, MAX, ZNF143, GFI1, GATA1, CBX2, CEBPG, CEBPB, ESRRA, KLF4, TEAD1, MYB, CREB1, NR2F1, EZH2, ESR1, OCA2, EGR2, CTCF, ELF3, USF1, MYNN, NOTCH3, ZNF677, ZIM3, KMT2B, STAG1
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops