- Basic information
- CohesinDB ID: CDBP00418220
- Locus: chr21-35819432-35819682
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CBFA2T2, CHD8, BRD1, CEBPA, MYCN, POU5F1, TOP2A, EBF1, ZFX, XBP1, ZBTB17, ZBTB48, WT1, DDX5, HOXB13, BCL3, ZNF300, ERG, YY1, RELA, MYC, RUNX2, SP140, GRHL3, ARNT, PRDM9, ZNF143, MED1, CEBPB, NCOA3, LMO2, OCA2, FEZF1, ZNF334, ZNF22, CTCF, SND1, AR, ZNF182, EGLN2, NCOR1, BRD4, MAZ, SMC3, STAG1, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops