Deatailed information for cohesin site CDBP00418230
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00418230
- Locus: chr21-35843830-35845505
- Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE116868, ENCSR917QNE, GSE206145, GSE206145-NatGen2015, GSE68388, GSE116344, GSE165895
- Cell type: RPE, Fibroblast, HCT-116, RH4, MB157, Liver, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: Mau2,SA1,Rad21,SMC1
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: FOXO1, XBP1, FOXA1, SUZ12, ZFHX2, ATF3, NFIC, ZNF362, RUNX3, CHD7, MECOM, MITF, TEAD1, ELF1, ETV1, ESR1, OCA2, USF2, JUN, CTCF, TCF12, BAF155, EP300, GATA6, IRF4, GLI4, POU2F2, CHD8, BRD1, ZSCAN5D, MYCN, DUX4, ZSCAN5A, STAT1, ZBTB48, ERG2, ERG, MYC, RAD21, GRHL3, PROX1, RXRA, GABPA, STAT3, NKX3-1, RCOR1, NR3C1, CEBPB, KMT2A, CREB1, EZH2, SPI1, IRF1, GATA2, FLI1, NFYB, ZIM3, NCOA2, RUNX1, SMC1A, MAFG, CEBPA, ZFX, TET2, ERG3, CBX8, SMARCC1, TWIST1, MEF2A, ZNF384, RUNX2, GATA4, ARNT, FOXM1, PBX3, FOS, CDK8, MED1, CEBPD, PIAS1, C11orf30, USF1, SP1, MAFK, HNF4A, ASH2L, SMC3, STAG1, PPARG, TBL1X, FOXA2, ZNF316, SS18, WT1, MAFF, ZNF662, CDK9, HOXB13, BCL3, ZKSCAN1, YY1, RELA, MCM3, SP140, ZFP36, HIF1A, ZIC2, TCF4, GATA3, TAL1, MAX, ZNF143, TLE3, KDM5B, PKNOX1, MYOD1, EGR2, AR, PAX3-FOXO1, RXR, EGR1, HSF1, RNF2, NOTCH3, BRD4, JUND, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): SMIM11A,SETD4,RUNX1,RCAN1,CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000205670, ENSG00000159200, ENSG00000159212, ENSG00000159216, ENSG00000185917,
- Related loop: chr21:34350000-34375000~~chr21:35825000-35850000, chr21:34350000-34375000~~chr21:35850000-35875000, chr21:34500000-34525000~~chr21:35825000-35850000, chr21:34675000-34700000~~chr21:35825000-35850000, chr21:34675000-34700000~~chr21:35850000-35875000, chr21:34700000-34725000~~chr21:35825000-35850000, chr21:34725000-34750000~~chr21:35825000-35850000, chr21:34750000-34775000~~chr21:35825000-35850000, chr21:34775000-34800000~~chr21:35825000-35850000, chr21:34775000-34800000~~chr21:35850000-35875000, chr21:34850000-34875000~~chr21:35825000-35850000, chr21:34875000-34900000~~chr21:35825000-35850000, chr21:34887476-34892097~~chr21:35838896-35841159, chr21:34887508-34892091~~chr21:35839117-35841138, chr21:34887518-34891075~~chr21:35839484-35840994, chr21:34887552-34891083~~chr21:35839536-35841080, chr21:34888177-34892032~~chr21:35838708-35841092, chr21:34888362-34892029~~chr21:35838891-35841138, chr21:34889149-34891526~~chr21:35839251-35841748, chr21:34889184-34892059~~chr21:35838738-35841127, chr21:34889188-34892063~~chr21:35839343-35841742, chr21:34889223-34891142~~chr21:35839105-35841278, chr21:34889251-34892128~~chr21:35838780-35841161, chr21:34889270-34892070~~chr21:35838715-35841129, chr21:34889367-34892315~~chr21:35838730-35841126, chr21:34889375-34890944~~chr21:35839523-35841115, chr21:34889427-34892109~~chr21:35839090-35841121, chr21:34975000-35000000~~chr21:35825000-35850000, chr21:35000000-35025000~~chr21:35825000-35850000, chr21:35025000-35050000~~chr21:35825000-35850000, chr21:35050107-35052241~~chr21:35839295-35841164, chr21:35050531-35052287~~chr21:35839087-35841133, chr21:35050674-35052154~~chr21:35839468-35841150, chr21:35100000-35125000~~chr21:35825000-35850000, chr21:35125000-35150000~~chr21:35825000-35850000, chr21:35200000-35225000~~chr21:35825000-35850000, chr21:35203018-35206280~~chr21:35838646-35841847, chr21:35250000-35275000~~chr21:35825000-35850000, chr21:35350000-35375000~~chr21:35825000-35850000, chr21:35375000-35400000~~chr21:35825000-35850000, chr21:35398212-35401570~~chr21:35839090-35841121, chr21:35399380-35401604~~chr21:35838708-35841092, chr21:35400000-35425000~~chr21:35825000-35850000, chr21:35425000-35450000~~chr21:35825000-35850000, chr21:35431177-35432375~~chr21:35838785-35841072, chr21:35431208-35432504~~chr21:35838718-35841129, chr21:35500000-35525000~~chr21:35825000-35850000, chr21:35507719-35509586~~chr21:35838715-35841129, chr21:35507729-35509950~~chr21:35838730-35841126, chr21:35507734-35509545~~chr21:35838780-35841161, chr21:35510787-35512464~~chr21:35838715-35841129, chr21:35525000-35550000~~chr21:35825000-35850000, chr21:35575000-35600000~~chr21:35825000-35850000, chr21:35625000-35650000~~chr21:35825000-35850000, chr21:35650000-35675000~~chr21:35825000-35850000, chr21:35674462-35675960~~chr21:35839090-35841121, chr21:35675000-35700000~~chr21:35825000-35850000, chr21:35725000-35750000~~chr21:35825000-35850000, chr21:35825000-35850000~~chr21:35925000-35950000, chr21:35825000-35850000~~chr21:36025000-36050000, chr21:35839105-35841278~~chr21:36027276-36029656, chr21:35839117-35841138~~chr21:35939344-35941327, chr21:35839251-35841748~~chr21:36027342-36029650, chr21:35839536-35841080~~chr21:36112039-36113944, chr21:35850000-35875000~~chr21:35950000-35975000, chr21:35850000-35875000~~chr21:35975000-36000000, chr21:35850000-35875000~~chr21:36000000-36025000, chr21:35850000-35875000~~chr21:36025000-36050000, chr21:35850000-35875000~~chr21:36100000-36125000,
Tools:
- Assay
