- Basic information
- CohesinDB ID: CDBP00418234
- Locus: chr21-35857491-35857818
-
Data sourse: ENCSR000BLD, GSE105028, GSE83726
-
Cell type: H1-hESC, RH4, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 57%,
"14_ReprPCWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, NKX2-5, FOXA2, NKX2-2, ZFX, MAFB, CTCF, NKX3-1
- Target gene symbol (double-evidenced CRMs): SETD4,SMIM11A,RUNX1,CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:35850000-35875000,
chr21:34675000-34700000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:35850000-35875000~~chr21:35950000-35975000,
chr21:35850000-35875000~~chr21:35975000-36000000,
chr21:35850000-35875000~~chr21:36000000-36025000,
chr21:35850000-35875000~~chr21:36025000-36050000,
chr21:35850000-35875000~~chr21:36100000-36125000,