- Basic information
- CohesinDB ID: CDBP00418237
- Locus: chr21-35876342-35877056
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 39%,
"15_Quies": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, MYCN, TOP2A, SS18, ZFX, XBP1, WT1, YY1, RELA, MYC, MCM3, SP140, ARNT, TAL1, NCOA3, ZNF264, EZH2, OCA2, GRHL2, CTCF, NOTCH3, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:35850000-35875000,
chr21:34675000-34700000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:35850000-35875000~~chr21:35950000-35975000,
chr21:35850000-35875000~~chr21:35975000-36000000,
chr21:35850000-35875000~~chr21:36000000-36025000,
chr21:35850000-35875000~~chr21:36025000-36050000,
chr21:35850000-35875000~~chr21:36100000-36125000,
chr21:35875000-35900000~~chr21:35975000-36000000,
chr21:35875000-35900000~~chr21:36025000-36050000,