- Basic information
- CohesinDB ID: CDBP00418238
- Locus: chr21-35878383-35879234
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Data sourse: ENCSR000BLD, GSE67783, GSE86191
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Cell type: H1-hESC, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 51%,
"15_Quies": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZNF263, MYCN, ZFX, DUX4, WT1, STAT1, ZBTB48, FOXA1, TET2, ERG, YY1, RAD21, PRDM1, SP140, PRDM9, EZH2, ZNF334, MYOD1, CTCF, MAFK, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:35850000-35875000,
chr21:34675000-34700000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:35850000-35875000~~chr21:35950000-35975000,
chr21:35850000-35875000~~chr21:35975000-36000000,
chr21:35850000-35875000~~chr21:36000000-36025000,
chr21:35850000-35875000~~chr21:36025000-36050000,
chr21:35850000-35875000~~chr21:36100000-36125000,
chr21:35875000-35900000~~chr21:35975000-36000000,
chr21:35875000-35900000~~chr21:36025000-36050000,