- Basic information
- CohesinDB ID: CDBP00418240
- Locus: chr21-35882770-35883222
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Data sourse: ENCSR000BLD, GSE206145-NatGen2015, GSE68388
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Cell type: H1-hESC, Fibroblast, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 32%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, THAP11, NFIA, NANOG, BCL6, PGR, FOXA2, POU5F1, HMG20A, CEBPA, SOX2, ZFX, SOX13, MIER2, ZNF316, SMAD3, MAFF, GTF2B, FOXA1, HLF, SUZ12, SAP130, PBX2, ZNF580, SMARCC1, HOXB13, KDM1A, RELA, RARA, ONECUT1, RUNX2, SMARCA4, MYC, ZFP64, CHD7, RAD21, SMAD4, MXD4, TOP2A, XRCC5, MAX, PRDM14, MITF, MED1, ARNTL, NR3C1, CEBPG, CEBPB, TEAD3, EZH2, RCOR2, ESR1, MBD1, CTCF, KAT8, EP300, MAFK, TFE3, ARID4B, AR, SOX5, BHLHE40, MNT, PAX3-FOXO1, GATA2, E2F6, ZNF644, HDAC2, MXD3, REST, ZBTB26, BRD4, PCGF2, BCOR, FOXA3, ZNF175, GATAD2A, TFAP2C
- Target gene symbol (double-evidenced CRMs): SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops