- Basic information
- CohesinDB ID: CDBP00418241
- Locus: chr21-35886116-35887366
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BSB, ENCSR000BLY, GSE105028, GSE121355, GSE103477, GSE131606, GSE108869, ENCSR000EDW, GSE25021, GSE115602, ENCSR000DZP, GSE67783, GSE86191, GSE138405, GSE76893, GSE101921, GSE135093, GSE206145-NatGen2015, GSE112028, ENCSR703TNG, GSE116344, GSE94872, ENCSR000EEG, GSE98367, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000BMY, GSE97394, ENCSR000BTQ, ENCSR167MTG, GSE110061, GSE129526, GSE111913, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS
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Cell type: MDM, RH4, GM2610, GM19240, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HeLa-S3, IMR-90, GM18486, DKO, H1-hESC, SNYDER, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, RT-112, Macrophage, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, Hep-G2, A-549, HUVEC, HCAEC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 20% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.622
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 55%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, XBP1, KDM4B, SUZ12, RBFOX2, ATF3, THAP1, CBFB, ZNF320, ELF1, TRIM28, ZNF573, RBM39, ESR1, OCA2, HDAC8, CTCF, SMC1, RBPJ, EED, JARID2, CHD8, ZSCAN5D, MYCN, POU5F1, RUNX1T1, ZNF263, ZBTB48, ZNF300, ERG, OGG1, MYC, RAD21, GRHL3, GABPA, STAT3, EZH2, GABPB1, SPI1, GATA2, FLI1, MAFG, SMC1A, BCL6, CBX1, CEBPA, ZFX, ZBTB2, RARA, ARNT, PRDM9, NCAPH2, CDK8, TEAD3, C11orf30, L3MBTL2, SETDB1, STAT5A, MAFK, AATF, SMC3, STAG2, STAG1, TRP47, FOXA2, TBL1X, MAFF, WT1, HOXB13, YY1, RELA, SP140, HIF1A, ZNF143, AGO2, KDM5B, ZNF334, AR, ZBTB40, RXR, EGLN2, ZBTB42, HEXIM1, TFIIIC, HSF1, NOTCH3, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops