- Basic information
- CohesinDB ID: CDBP00418242
- Locus: chr21-35895668-35896317
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Data sourse: GSE116868, GSE25021, GSE86191
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Cell type: MCF-7, HCT-116, MB157
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, EBF1, ZFX, XBP1, CDK9, RELA, ZNF112, MYC, RUNX3, GRHL3, ARNT, GABPA, MECOM, STAT3, XRCC5, PAX5, ETV6, ZNF320, HNRNPH1, MED1, TERF1, TRIM28, EZH2, ESR1, OCA2, CTCF, SND1, BCL11A, SPI1, IRF4, NOTCH3, IKZF2, BRD4, SMC3, STAG1, EED
- Target gene symbol (double-evidenced CRMs): SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops