- Basic information
- CohesinDB ID: CDBP00418247
- Locus: chr21-35918182-35918254
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Data sourse: GSE120943
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Cell type: Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, BCL6, CEBPA, POU5F1, HMG20A, RUNX1T1, SOX13, ZSCAN16, XBP1, DUX4, FOXA1, FOXF1, ZNF574, DDX5, SAP130, HNF4G, KDM1A, ERG, RELA, RARA, ZNF384, HOMEZ, PROX1, OTX2, PRDM9, STAT3, XRCC5, MAX, ZNF143, NFE2, CEBPG, CEBPB, TEAD3, TRIM28, CREB1, ZNF768, EZH2, LMO2, TP73, ZNF334, EVI1, CTCF, TCF12, ELF3, EP300, SPI1, SP1, ARID4B, AR, SOX5, BHLHE40, HNF4A, HDAC2, GATA6, ZNF644, ZBTB26, NCOR1, BRD4, TCF3, FOXA3, GATAD2A, DMAP1
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops