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Basic information

CohesinDB ID: CDBP00418248

Locus: chr21-35920441-35920733

Data sourse: ENCSR054FKH, GSE72082

Cell type: Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 86% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 56%, "14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, BCL6, CEBPA, POU5F1, HMG20A, RUNX1T1, SOX13, ZSCAN16, XBP1, DUX4, FOXA1, FOXF1, ZNF574, DDX5, SAP130, HNF4G, KDM1A, ERG, RELA, RARA, ZNF384, HOMEZ, PROX1, OTX2, PRDM9, STAT3, XRCC5, MAX, ZNF143, NFE2, CEBPG, CEBPB, TEAD3, TRIM28, CREB1, ZNF768, EZH2, LMO2, TP73, ZNF334, EVI1, CTCF, TCF12, ELF3, EP300, SPI1, SP1, ARID4B, AR, SOX5, BHLHE40, HNF4A, HDAC2, GATA6, ZNF644, ZBTB26, NCOR1, BRD4, TCF3, FOXA3, GATAD2A, DMAP1

Target gene symbol (double-evidenced CRMs): SMIM11A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670,

eachgene

Deatailed information for cohesin site CDBP00418248