- Basic information
- CohesinDB ID: CDBP00418273
- Locus: chr21-36002247-36002510
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Data sourse: GSE116344, GSE67783, ENCSR153HNT
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Cell type: K-562, RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 58%,
"15_Quies": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SKI, BCL6, PPARG, CEBPA, POU5F1, HMG20A, SOX13, ZFX, XBP1, FOXA1, SAP130, TCF7, RXRB, ERG, KDM1A, RELA, RARA, ZNF384, OGG1, NFIC, HOMEZ, GRHL3, ARNT, RXRA, SMAD4, ZNF614, MIER3, NR2F6, NCOA3, TEAD3, TEAD1, EZH2, RCOR2, ESR1, STAG1, ZNF334, CTCF, ELF3, KAT8, EP300, JUN, MIXL1, AR, SOX5, IKZF5, ZBTB26, DRAP1, ZGPAT, FOXP1, FOXA3, GATAD2A, ETV5, ETV4
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
- Related loop:
chr21:34350000-34375000~~chr21:36000000-36025000,
chr21:34700000-34725000~~chr21:35975000-36000000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:34850000-34875000~~chr21:35975000-36000000,
chr21:34875000-34900000~~chr21:35975000-36000000,
chr21:34950000-34975000~~chr21:35975000-36000000,
chr21:35850000-35875000~~chr21:35975000-36000000,
chr21:35850000-35875000~~chr21:36000000-36025000,
chr21:35875000-35900000~~chr21:35975000-36000000,
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:7800000-7825000~~chr21:36000000-36025000,