- Basic information
- CohesinDB ID: CDBP00418280
- Locus: chr21-36022567-36023218
-
Data sourse: ENCSR000EFJ, GSE165895
-
Cell type: IMR-90, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 54%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PAX7, FOXO1, PGR, CHD8, BRD1, FOXA2, MYCN, SS18, ZFX, ZNF30, ZBTB48, WT1, FOXF1, FOXA1, ZSCAN5A, CBX8, SUZ12, ERG3, DDX5, HOXB13, SMARCC1, ERG, KDM1A, RELA, YY1, ZNF384, ATF3, MYC, RUNX2, RAD21, MCM3, ARNT, GRHL3, HIF1A, TCF4, NRF1, SP140, PBX3, TP63, XRCC5, ZNF143, RCOR1, HAND2, MED1, CBX2, NR3C1, CEBPB, KLF4, NCOA3, TEAD3, ELF1, KMT2A, ETV1, SNAI2, SCRT2, EZH2, KDM5B, ESR1, CREB1, ZNF334, TBX5, EBF3, PHOX2B, CTCF, TCF12, JUN, SPI1, EP300, AR, GATA2, FLI1, SCRT1, MAZ, AATF, SMC3, STAG1, FOSL2
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000205670,
- Related loop:
chr21:33900000-33925000~~chr21:36025000-36050000,
chr21:34350000-34375000~~chr21:36000000-36025000,
chr21:34350000-34375000~~chr21:36025000-36050000,
chr21:34500000-34525000~~chr21:36025000-36050000,
chr21:34675000-34700000~~chr21:36025000-36050000,
chr21:34700000-34725000~~chr21:36025000-36050000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:34750000-34775000~~chr21:36025000-36050000,
chr21:34800000-34825000~~chr21:36025000-36050000,
chr21:34825000-34850000~~chr21:36025000-36050000,
chr21:34850000-34875000~~chr21:36025000-36050000,
chr21:34875000-34900000~~chr21:36025000-36050000,
chr21:35025000-35050000~~chr21:36025000-36050000,
chr21:35050018-35052226~~chr21:36020644-36022430,
chr21:35050424-35052239~~chr21:36027752-36029478,
chr21:35050508-35052311~~chr21:36027802-36029492,
chr21:35200000-35225000~~chr21:36025000-36050000,
chr21:35250000-35275000~~chr21:36025000-36050000,
chr21:35399881-35401571~~chr21:36027315-36029474,
chr21:35400000-35425000~~chr21:36025000-36050000,
chr21:35500000-35525000~~chr21:36025000-36050000,
chr21:35507739-35509404~~chr21:36027276-36029656,
chr21:35507828-35509473~~chr21:36027356-36029689,
chr21:35575000-35600000~~chr21:36025000-36050000,
chr21:35625000-35650000~~chr21:36025000-36050000,
chr21:35675000-35700000~~chr21:36025000-36050000,
chr21:35825000-35850000~~chr21:36025000-36050000,
chr21:35839105-35841278~~chr21:36027276-36029656,
chr21:35839251-35841748~~chr21:36027342-36029650,
chr21:35850000-35875000~~chr21:36000000-36025000,
chr21:35850000-35875000~~chr21:36025000-36050000,
chr21:35875000-35900000~~chr21:36025000-36050000,
chr21:35885577-35887971~~chr21:36027779-36029476,
chr21:35885747-35886950~~chr21:36027752-36029478,
chr21:35925000-35950000~~chr21:36025000-36050000,
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:36027315-36029474~~chr21:36112024-36114058,
chr21:36027381-36029536~~chr21:36112029-36113907,
chr21:36027554-36029658~~chr21:36112019-36114026,
chr21:7800000-7825000~~chr21:36000000-36025000,
chr21:7800000-7825000~~chr21:36025000-36050000,