- Basic information
- CohesinDB ID: CDBP00418286
- Locus: chr21-36039809-36040296
-
Data sourse: GSE67783, GSE86191, GSE111913, ENCSR153HNT, GSE131606
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Cell type: HCT-116, RT-112, K-562, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 71%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, BCL6, CHD8, ZSCAN5D, ZNF263, POU5F1, SMC1A, MYCN, ZFX, ZNF600, XBP1, ZBTB17, ZBTB48, WT1, ZSCAN5A, PAF1, FOXA1, TET2, ERG3, PRDM10, ERG, YY1, RELA, EZH1, SP140, ARNT, HIF1A, ZIC2, GRHL3, CTNNB1, PBX4, ATF2, NKX2-1, NKX3-1, ZNF143, DNMT3B, PDX1, SCRT2, CREB1, EZH2, ESR1, OCA2, USF2, CTCF, RBM22, AR, FOXA2, ATF7, SCRT1, JUND, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): SETD4,SMIM11A,CLIC6,RUNX1,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159200,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:33900000-33925000~~chr21:36025000-36050000,
chr21:34350000-34375000~~chr21:36025000-36050000,
chr21:34500000-34525000~~chr21:36025000-36050000,
chr21:34675000-34700000~~chr21:36025000-36050000,
chr21:34700000-34725000~~chr21:36025000-36050000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34750000-34775000~~chr21:36025000-36050000,
chr21:34800000-34825000~~chr21:36025000-36050000,
chr21:34825000-34850000~~chr21:36025000-36050000,
chr21:34850000-34875000~~chr21:36025000-36050000,
chr21:34875000-34900000~~chr21:36025000-36050000,
chr21:35025000-35050000~~chr21:36025000-36050000,
chr21:35200000-35225000~~chr21:36025000-36050000,
chr21:35250000-35275000~~chr21:36025000-36050000,
chr21:35400000-35425000~~chr21:36025000-36050000,
chr21:35500000-35525000~~chr21:36025000-36050000,
chr21:35575000-35600000~~chr21:36025000-36050000,
chr21:35625000-35650000~~chr21:36025000-36050000,
chr21:35675000-35700000~~chr21:36025000-36050000,
chr21:35825000-35850000~~chr21:36025000-36050000,
chr21:35850000-35875000~~chr21:36025000-36050000,
chr21:35875000-35900000~~chr21:36025000-36050000,
chr21:35925000-35950000~~chr21:36025000-36050000,
chr21:36038258-36039755~~chr21:36103947-36105791,
chr21:36045268-36046896~~chr21:36112056-36113996,
chr21:7800000-7825000~~chr21:36025000-36050000,