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Basic information

CohesinDB ID: CDBP00418291

Locus: chr21-36047110-36047488

Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE105028, ENCSR000ECE, ENCSR153HNT, GSE131606, GSE97394

Cell type: H1-hESC, DKO, H9-hESC, K-562, Liver, HUES64

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 92% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "4_Tx": 60%, "5_TxWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: TOP2A, RAD21, ZFX, RBFOX2, CTCF

Target gene symbol (double-evidenced CRMs): CLIC6,SMIM11A,SETD4,RCAN1,RUNX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159200, ENSG00000159212, ENSG00000159216, ENSG00000185917,

eachgene

Deatailed information for cohesin site CDBP00418291