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Basic information

CohesinDB ID: CDBP00418293

Locus: chr21-36050139-36050464

Data sourse: ENCSR153HNT, GSE98367

Cell type: K-562, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 92% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "4_Tx": 77%, "5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SUPT5H, GATA2, SMC1A, RUNX2, MAFF, RBM22, MAFK

Target gene symbol (double-evidenced CRMs): SMIM11A,DOP1B,SETD4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 63

Number of somatic mutations (non-coding): 9

Related genes and loops

Related gene: ENSG00000205670, ENSG00000185917, ENSG00000142197,

eachgene

Deatailed information for cohesin site CDBP00418293